FA Cup 2023/24, First Qualifying Round |
 | 02.09.2023 |  | Redhill | – | Herne Bay | | 1:0 (1:0) |
| Redhill |
FA Cup 2022/23, Third Qualifying Round |
| 01.10.2022 | | Hendon | – | Herne Bay | | 3:2 (1:2) |
| London |
FA Cup 2021/22, Preliminary Round |
| 21.08.2021 | | Bedfont Sports | – | Herne Bay | | 3:1 (2:1) |
| London |
FA Cup 2020/21, Preliminary Round |
| 12.09.2020 | | Hastings United | – | Herne Bay | | 1:0 |
| Hastings |
FA Cup 2019/20, First Qualifying Round |
| 07.09.2019 | | Haringey Borough | – | Herne Bay | | 3:0 (1:0) |
| London |
FA Cup 2018/19, First Qualifying Round |
| 08.09.2018 | | Leatherhead | – | Herne Bay | | 2:0 (1:0) |
| Leatherhead |
FA Cup 2017/18, Third Qualifying Round |
| 30.09.2017 | | Margate | – | Herne Bay | | 2:0 (0:0) |
| Margate |
FA Cup 2016/17, Second Qualifying Round |
| 20.09.2016 | | Herne Bay | – | Hemel Hempstead Town | | 1:5 * |
| Herne Bay |
FA Cup 2015/16, Second Qualifying Round |
| 29.09.2015 | | Hastings United | – | Herne Bay | | 3:2 (2:0) * |
| Hastings |
FA Cup 2014/15, First Qualifying Round |
| 13.09.2014 | | Tonbridge Angels | – | Herne Bay | | 6:0 |
| Tonbridge |
FA Cup 2013/14, Preliminary Round |
| 03.09.2013 | | Herne Bay | – | Eastbourne United FC | | 1:2 * |
| Herne Bay |
FA Cup 2012/13, Preliminary Round |
| 25.08.2012 | | Herne Bay | – | Folkestone Invicta | | 1:3 |
| Herne Bay |
FA Cup 2011/12, First Qualifying Round |
| 17.09.2011 | | Herne Bay | – | Erith Town | | 2:3 |
| |
FA Cup 2010/11, Extra Preliminary Round |
| 14.08.2010 | | Alresford Town | – | Herne Bay | | 5:2 |
| |
FA Cup 2009/10, Extra Preliminary Round |
| 15.08.2009 | | Southwick | – | Herne Bay | | 2:1 |
| |
FA Cup 2008/09, Preliminary Round |
| 02.09.2008 | | Chipstead | – | Herne Bay | | 2:0 aet
(0:0) * |
| |
FA Cup 2007/08, Second Qualifying Round |
| 03.10.2007 | | Herne Bay | – | Hayes & Yeading United | | 0:3 * |
| |
FA Cup 2006/07, Extra Preliminary Round |
| 19.08.2006 | | Herne Bay | – | Erith & Belvedere | | 1:6 |
| |
FA Cup 2005/06, First Qualifying Round |
| 13.09.2005 | | Herne Bay | – | Didcot Town | | 2:6 * |
| |
FA Cup 2004/05, Preliminary Round |
| | | Herne Bay | – | Gosport Borough | | 1:2 |
| |
FA Cup 2003/04, Preliminary Round |
| | | Croydon Athletic | – | Herne Bay | | 2:1 |
| |
FA Cup 2002/03, Third Qualifying Round |
| | | Heybridge Swifts | – | Herne Bay | | 1:0 |
| |
FA Cup 2001/02, Preliminary Round |
| | | Herne Bay | – | St Leonards | | 0:2 |
| |
FA Cup 2000/01, Second Qualifying Round |
| | | Herne Bay | – | Aylesbury United | | 0:5 |
| |
FA Cup 1999/00, Third Qualifying Round |
| | | Herne Bay | – | Horsham YMCA | | 0:3 |
| |
FA Cup 1998/99, Preliminary Round |
| | | Eastbourne Town | – | Herne Bay | | 1:0 |
| |
FA Cup 1997/98, First Qualifying Round |
| | | Herne Bay | – | Dartford | | 1:2 |
| |
FA Cup 1996/97, Third Qualifying Round |
| | | Welling United | – | Herne Bay | | 2:0 |
| |
FA Cup 1995/96, First Qualifying Round |
| | | Bromley | – | Herne Bay | | 3:1 |
| |
FA Cup 1994/95, First Qualifying Round |
| | | Herne Bay | – | Dulwich Hamlet | | 1:3 |
| |
FA Cup 1993/94, Second Qualifying Round |
| | | Erith & Belvedere | – | Herne Bay | | 2:1 |
| |
FA Cup 1992/93, First Qualifying Round |
| | | Banstead Athletic | – | Herne Bay | | 4:1 |
| |
FA Cup 1991/92, First Qualifying Round |
| | | Herne Bay | – | Kingstonian | | 0:2 |
| |
FA Cup 1990/91, First Qualifying Round |
| | | Herne Bay | – | Lewes | | 0:1 |
| |
FA Cup 1989/90, First Qualifying Round |
| | | Herne Bay | – | Dover Athletic | | 0:6 |
| |
FA Cup 1988/89, Preliminary Round |
| | | Molesey | – | Herne Bay | | 7:0 |
| |
FA Cup 1987/88, First Qualifying Round |
| | | Gravesend & Northfleet | – | Herne Bay | | 6:1 |
| |
FA Cup 1986/87, Fourth Qualifying Round |
| | | Farnborough Town | – | Herne Bay | | 4:0 |
| |
FA Cup 1985/86, First Qualifying Round |
| | | Herne Bay | – | Carshalton Athletic | | 1:5 |
| |
FA Cup 1984/85, First Qualifying Round |
| | | Herne Bay | – | Walthamstow Avenue | | 0:3 |
| |
FA Cup 1983/84, First Qualifying Round |
| | | Herne Bay | – | Gravesend & Northfleet | | 1:3 |
| |
FA Cup 1982/83, Preliminary Round |
| | | Herne Bay | – | Bognor Regis Town | | 0:1 |
| |
FA Cup 1981/82, First Qualifying Round |
| | | Epsom & Ewell | – | Herne Bay | | 2:1 |
| |
FA Cup 1980/81, Preliminary Round |
| | | Herne Bay | – | Tonbridge | | 0:3 |
| |
FA Cup 1979/80, Preliminary Round |
| | | Herne Bay | – | Eastbourne Town | | 0:2 |
| |
FA Cup 1978/79, Preliminary Round |
| | | Horsham YMCA | – | Herne Bay | | 1:0 * |
| |
FA Cup 1977/78, First Qualifying Round |
| | | Bromley | – | Herne Bay | | 5:0 * |
| |
FA Cup 1976/77, First Qualifying Round |
| | | Ramsgate | – | Herne Bay | | 2:1 |
| |
FA Cup 1975/76, First Qualifying Round |
| | | Faversham Town | – | Herne Bay | | 2:1 |
| |
FA Cup 1974/75, First Qualifying Round |
| | | Canterbury City | – | Herne Bay | | 4:0 |
| |
FA Cup 1973/74, Preliminary Round |
| | | Ramsgate | – | Herne Bay | | 2:1 |
| |
FA Cup 1972/73, Second Qualifying Round |
| | | Ashford Town | – | Herne Bay | | 6:0 |
| |
FA Cup 1971/72, Second Qualifying Round |
| | | Maidstone United | – | Herne Bay | | 3:0 |
| |
FA Cup 1970/71, Fourth Qualifying Round |
| | | Herne Bay | – | Margate | | 0:1 |
| |
FA Cup 1969/70, First Qualifying Round |
| | | Folkestone | – | Herne Bay | | 1:0 * |
| |
FA Cup 1968/69, First Qualifying Round |
| | | Herne Bay | – | Sheppey United | | 3:5 * |
| |
FA Cup 1967/68, First Qualifying Round |
| | | Herne Bay | – | Bexhill Town | | 0:2 |
| |
FA Cup 1966/67, First Qualifying Round |
| | | Herne Bay | – | Canterbury City | | 0:4 |
| |
FA Cup 1965/66, Second Qualifying Round |
| | | Canterbury City | – | Herne Bay | | 1:0 |
| |
