Russian Cup 2020/21, 1/64 finals |
 | 26.08.2020 |  | Tom (Tomsk) | – | FK Nizhniy Novgorod (Nizhniy Novgorod) | | 0:1 (0:1) * |
| Tomsk |
Russian Cup 2019/20, 1/8 finals |
| 30.10.2019 | | Zenit (Saint Petersburg) | – | Tom (Tomsk) | | 4:0 (1:0) |
| Saint Petersburg |
Russian Cup 2016/17, 1/16 finals |
| 21.09.2016 | | Sibir (Novosibirsk) | – | Tom (Tomsk) | | 1:0 aet
(0:0) |
| Novosibirsk |
Russian Cup 2015/16, 1/32 finals |
| 27.08.2015 | | Baikal (Irkutsk) | – | Tom (Tomsk) | | 3:2 (1:1) |
| Irkutsk |
Russian Cup 2014/15, 1/32 finals |
| 31.08.2014 | | Sibir (Novosibirsk) | – | Tom (Tomsk) | | 3:2 (2:2) |
| Novosibirsk |
Russian Cup 2012/13, 1/16 finals |
| 26.09.2012 | | Tom (Tomsk) | – | CSKA (Moscow) | | 0:1 (0:1) |
| Tomsk |
Russian Cup 2011/12, 1/8 finals |
| 21.09.2011 | | FK Rostov (Rostov-on-Don) | – | Tom (Tomsk) | | 3:1 (2:0) |
 | Rostov-on-Don |
Russian Cup 2010/11, 1/16 finals |
| 14.07.2010 | | FK Krasnodar (Krasnodar) | – | Tom (Tomsk) | | 2:1 aet
(1:1, 1:1) |
| Krasnodar |
Russian Cup 2009/10, 1/16 finals |
| 15.07.2009 | | Alaniya (Vladikavkaz) | – | Tom (Tomsk) | | 1:0 (0:0) |
| Vladikavkaz |
Russian Cup 2008/09, Quarterfinal |
| 22.04.2009 | | FK Moskva (Moscow) | – | Tom (Tomsk) | | 2:1 (0:0) |
| Moscow |
Russian Cup 2007/08, Semifinal |
| 16.04.2008 | | CSKA (Moscow) | – | Tom (Tomsk) | | 2:1 (1:1) |
| Moscow |
Russian Cup 2006/07, 1/8 finals |
| 04.03.2007 | | Dynamo (Moscow) | – | Tom (Tomsk) | | 2:0 (1:0) |
| Moscow |
Russian Cup 2005/06, 1/16 finals |
| 13.07.2005 | | Spartak (Kostroma) | – | Tom (Tomsk) | | 2:0 (0:0) |
| Karavayevo |
Russian Cup 2004/05, 1/16 finals |
| 10.08.2004 | | Kuban (Krasnodar) | – | Tom (Tomsk) | | 3:1 (0:0) |
| Krasnodar |
Russian Cup 2003/04, 1/8 finals |
| 06.03.2004 | | Torpedo-Metallurg (Moscow) | – | Tom (Tomsk) | | 3:1 (1:0) |
| Moscow |
Russian Cup 2003/04, 1/16 finals |
| 16.11.2003 | | Torpedo (Moscow) | – | Tom (Tomsk) | | 1:0 (0:0) |
| Moscow |
Russian Cup 2002/03, 1/8 finals |
| 19.10.2002 | | Tom (Tomsk) | – | Sokol (Saratov) | | 0:1 (0:1) |
| Tomsk |
Russian Cup 2001/02, 1/16 finals |
| 09.09.2001 | | Tom (Tomsk) | – | Sokol (Saratov) | | 0:1 (0:0) |
| Tomsk |
Russian Cup 2000/01, 1/16 finals |
| 09.09.2000 | | Tom (Tomsk) | – | Lokomotiv (Moscow) | | 0:1 aet
(0:0) |
| Tomsk |
Russian Cup 1999/00, 1/16 finals |
| 12.10.1999 | | Tom (Tomsk) | – | CSKA (Moscow) | | 0:5 (0:1) |
| Tomsk |
Russian Cup 1998/99, 1/8 finals |
| 10.11.1998 | | CSKA (Moscow) | – | Tom (Tomsk) | | 2:1 (1:0) |
| Moscow |
Russian Cup 1997/98, 1/8 finals |
| 21.03.1998 | | Alaniya (Vladikavkaz) | – | Tom (Tomsk) | | 1:0 (1:0) |
| Vladikavkaz |
Russian Cup 1996/97, 1/16 finals |
| 14.08.1996 | | Tom (Tomsk) | – | Krylia Sovetov (Samara) | | 0:2 (0:1) |
| Tomsk |
Russian Cup 1995/96, 1/128 finals |
| 06.05.1995 | | Torpedo (Rubtsovsk) | – | Tom (Tomsk) | | 3:2 aet
(2:0, 2:2) |
| Rubtsovsk |
Russian Cup 1994/95, 1/256 finals |
| 08.05.1994 | | Metallurg (Novokuznetsk) | – | Tom (Tomsk) | | 2:0 (1:0) |
| Novokuznetsk |
Russian Cup 1993/94, 1/128 finals |
| 02.05.1993 | | Dynamo-Gazovik (Tyumen) | – | Tom (Tomsk) | | 4:0 (2:0) |
| Tyumen |
Russian Cup 1992/93, 1/512 finals |
| 02.05.1992 | | Kuzbass (Kemerovo) | – | Tom (Tomsk) | | 2:1 (1:0) |
| Kemerovo |
