Europa League 2017/18, First Qualifying Round |
| 06.07.2017 | | Atlantas | | Qayrat | | 1:2 (1:2) |
| Klaipėda |
Europa League 2017/18, First Qualifying Round |
| 29.06.2017 | | Qayrat | | Atlantas | | 6:0 (4:0) |
| Almaty |
Europa League 2016/17, First Qualifying Round |
| 07.07.2016 | | HJK | | Atlantas | | 1:1 (1:0) |
| Helsinki |
Europa League 2016/17, First Qualifying Round |
| 30.06.2016 | | Atlantas | | HJK | | 0:2 (0:0) |
| Klaipėda |
Europa League 2015/16, First Qualifying Round |
| 09.07.2015 | | Beroe | | Atlantas | | 3:1 (2:0) |
| Stara Zagora |
Europa League 2015/16, First Qualifying Round |
| 02.07.2015 | | Atlantas | | Beroe | | 0:2 (0:0) |
| Klaipėda |
Europa League 2014/15, Second qualifying round |
| 24.07.2014 | | Shakhtyor Karagandy | | Atlantas | | 3:0 (0:0) |
| Karagandy |
Europa League 2014/15, Second qualifying round |
| 17.07.2014 | | Atlantas | | Shakhtyor Karagandy | | 0:0 |
| Klaipėda |
Europa League 2014/15, First Qualifying Round |
| 10.07.2014 | | Atlantas | | Differdange 03 | | 3:1 (1:0) |
| Klaipėda |
Europa League 2014/15, First Qualifying Round |
| 03.07.2014 | | Differdange 03 | | Atlantas | | 1:0 (0:0) |
| Déifferdang |
UEFA Cup 2005/06, First Qualifying Round |
| 28.07.2005 | | Atlantas | | Rhyl | | 3:2 (1:1) |
| Klaipėda |
UEFA Cup 2005/06, First Qualifying Round |
| 14.07.2005 | | Rhyl | | Atlantas | | 2:1 (1:0) |
| Rhyl |
UEFA Cup 2003/04, Qualifying round |
| 27.08.2003 | | Atlantas | | Dyskobolia | | 1:4 (0:2) |
| Klaipėda |
UEFA Cup 2003/04, Qualifying round |
| 14.08.2003 | | Dyskobolia | | Atlantas | | 2:0 (1:0) |
| Grodzisk Wielkopolski |
UEFA Cup 2002/03, Qualifying round |
| 29.08.2002 | | Atlantas | | Liteks | | 1:3 (1:0) |
| Klaipėda |
UEFA Cup 2002/03, Qualifying round |
| 15.08.2002 | | Liteks | | Atlantas | | 5:0 (1:0) |
| Lovech |
UEFA Cup 2001/02, Qualifying round |
| 23.08.2001 | | Rapid Bucureşti | | Atlantas | | 8:0 (2:0) |
| Bucureşti |
UEFA Cup 2001/02, Qualifying round |
| 09.08.2001 | | Atlantas | | Rapid Bucureşti | | 0:4 (0:1) |
| Klaipėda |